Package: survMisc 0.5.1

survMisc: Miscellaneous Functions for Survival Data

A collection of functions to help in the analysis of right-censored survival data. These extend the methods available in package:survival.

Authors:Chris Dardis

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survMisc.pdf |survMisc.html✨
survMisc/json (API)

# Install 'survMisc' in R:
install.packages('survMisc', repos = c('https://dardisco.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dardisco/survmisc/issues

Datasets:
  • gastric - Gastric cancer trial data

On CRAN:

9.46 score 1 stars 54 packages 205 scripts 22k downloads 34 mentions 13 exports 39 dependencies

Last updated 5 years agofrom:d6cefe378d. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-winERROROct 26 2024
R-4.5-linuxERROROct 26 2024
R-4.4-winERROROct 26 2024
R-4.4-macERROROct 26 2024
R-4.3-winERROROct 26 2024
R-4.3-macERROROct 26 2024

Exports:asLongasWideautoplotcicompCOVcutpgofncprofLikrsqsften

Dependencies:clicolorspacedata.tableevaluatefansifarverggplot2gluegridExtragtablehighrisobandkm.ciKMsurvknitrlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalessurvivaltibbleutf8vctrsviridisLitewithrxfunyamlzoo

survivalPlots

Rendered fromsurvivalPlots.Rnwusingknitr::knitron Oct 26 2024.

Last update: 2016-05-11
Started: 2016-05-11

Readme and manuals

Help Manual

Help pageTopics
Convert an object to "wide" or "long" form.asLong asLong.ten asWide asWide.ten
Arrange a survival plot with corresponding table and legend.autoplot.tableAndPlot autoplotTableAndPlot
Generate a 'ggplot' for a 'survfit' or 'ten' objectautoplot autoplot.stratTen autoplot.survfit autoplot.ten autoplotTen
*c*onfidence *i*ntervals for survival curves.ci ci.stratTen ci.ten
compare survival curvescomp comp.ten
*cov*ariance matrix for survival dataCOV COV.numeric COV.stratTen COV.ten
*cut p*oint for a continuous variable in a model fit with 'coxph' or 'survfit'.cutp cutp.coxph cutp.survfit
gastric cancer trial datagastric
*g*oodness *o*f *f*it test for a 'coxph' objectgof gof.coxph
Add *n*umber *c*ensored.nc nc.stratTen nc.ten
Plot a 'Surv' object.plot.Surv plotSurv
predicted eventspredict predict.ten
'print' methodsprint print.COV print.lrt print.stratTableAndPlot print.sup print.tableAndPlot print.ten
Profile likelihood for coefficients in a 'coxph' modelprofLik
r^2 measures for a a 'coxph' or 'survfit' modelrsq rsq.coxph rsq.survfit
*s*urvival (or hazard) *f*unction based on e and n.sf sf.default sf.numeric sf.stratTen sf.ten strat.Ten
Miscellaneous Functions for Survival AnalysissurvMisc_package-package survMisc survMisc_package
*t*ime, *e*vent(s) and *n*umber at risk.ten ten.coxph ten.data.frame ten.data.table ten.formula ten.numeric ten.Surv ten.survfit ten.ten